Package: imprinting
Type: Package
Title: Calculate Birth Year-Specific Probabilities of Immune Imprinting
        to Influenza
Version: 0.1.1
Authors@R: 
    c(person(given = "Katelyn",
             family = "Gostic",
             role = c("aut"),
             email = "kgostic@uchicago.edu"),
      person(given = "Alex",
             family = "Byrnes",
             role = c("ctb", "cre"),
             email = "abyrnes@uchicago.edu"))
Description: Reconstruct birth-year specific probabilities of immune
        imprinting to influenza A, using the methods of Gostic et al.
        (2016) <doi:10.1126/science.aag1322>. Plot, save, or export the
        calculated probabilities for use in your own research. By
        default, the package calculates subtype-specific imprinting
        probabilities, but with user-provided frequency data, it is
        possible to calculate probabilities for arbitrary kinds of
        primary exposure to influenza A, including primary vaccination
        and exposure to specific clades, strains, etc.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: dplyr (>= 1.0.9), tidyr (>= 1.2.0), cowplot (>= 1.0.0),
        ggplot2, tidyselect
Depends: R (>= 3.5.0)
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), devtools
Config/testthat/edition: 3
RoxygenNote: 7.2.2
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
URL: https://cobeylab.github.io/imprinting/
BugReports: https://github.com/cobeylab/imprinting/issues
Config/pak/sysreqs: libicu-dev
Repository: https://cobeylab.r-universe.dev
Date/Publication: 2022-12-16 22:29:31 UTC
RemoteUrl: https://github.com/cobeylab/imprinting
RemoteRef: HEAD
RemoteSha: 266f9cdf2f2d95745e6627a64c35eecdc6fe07e3
NeedsCompilation: no
Packaged: 2026-10-17 07:45:24 UTC; root
Author: Katelyn Gostic [aut],
  Alex Byrnes [ctb, cre]
Maintainer: Alex Byrnes <abyrnes@uchicago.edu>